A program to add sections to a topology file that correspond to PDB information.
The input files are given by -i and -p , with the output prmtop being given by the flag -o . It adds the sections RESIDUE_NUMBER, RESIDUE_CHAINID, and ATOM_ELEMENT to the topology file, leaving the rest unchanged. Note that the input_prmtop and matching_pdb must match each other.

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