AmberTools

AmberTools is comprised of a large number of programs designed to aid you in your computational studies of chemical systems, and the number of released tools grows regularly. This section provides a list of the main programs included with AmberTools:

AddToBox

ChBox

CheckMD

MCPB

MMPBSA.py

MTKppConstants

PropPDB

UnitCell

acdoctor

add_pdb

am1bcc

ambpdb

ante-MMPBSA.py

antechamber

atomtype

bondtype

calcpka

capActiveSite

chamber

charmmlipid2amber.x

cpinutil

cpptraj

elsize

espgen

frcmod2xml

func

hcp_getpdb

lmodprmtop

matextract

matgen

matmerger

matmul

mdgx

MdoutAnalyzer.py

mmE

mmpbsa_py_energy

mmpbsa_py_nabmode

mosurf

nab

ncdump

ncgen

paramfit

parmcal

parmchk2

parmed.py

pbsa

pdbSearcher

prep2xml

prepgen

process_mdout.perl

process_minout.perl

protonator

ptraj

rdparm

reduce

residuegen

resp

respgen

rism1d

rism3d.snglpnt

sequenceAlligner

softcore_setup.py

sqm

stats

stdLib2Sdf

superimposer tleap transform

tss_init

tss_main

tss_next

ucpp

xaLeap

xleap

xparmed.py

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